John R Prensner
Assistant Professor of Pediatrics
Assistant Professor of Biological Chemistry
Pediatrics
1150 W. Medical Center Drive, MSRBII Room 2560B
Ann Arbor, MI 48109-0600
[email protected]

Available to mentor

John R Prensner
Assistant Professor
  • About
  • Links
  • Qualifications
  • Center Memberships
  • Research Overview
  • Recent Publications
  • About

    Dr. Prensner is a physician-scientist and pediatric hematologist/oncologist specializing in the treatment of children with brain tumors. He is a Principal Investigator of an independent biomedical research laboratory focused on the study of the cancer genome in childhood brain cancers. His research interests focus on the molecular mechanisms and driver genes of brain cancers such as medulloblastoma, atypical teratoid/rhabdoid tumor, and diffuse intrinsic pontine glioma.

    Dr. Prensner received his undergraduate degree from Tufts University in 2005 and his medical and doctorate degrees from the University of Michigan in 2014. He completed clinical training in pediatrics in the Boston Combined Residency Program and his clinical fellowship in pediatric hematology/oncology at Boston Children's Hospital and the Dana-Farber Cancer Institute. After finishing his clinical training, he conducted post-doctoral research at the Broad Institute of MIT and Harvard. He returned to Ann Arbor in 2023 to join the faculty at the University of Michigan. He is board-certified in Pediatrics and Pediatric Hematology/Oncology.

    Links
    Qualifications
    • Post-doctoral Research Fellowship
      Broad Institute of MIT and Harvard, Cambridge, 2023
    • Pediatric Hematology/Oncology Fellowship
      Dana-Farber Cancer Institute, Boston, 2020
    • Pediatrics Residency
      Boston Combined Residency Program, Boston, 2017
    • MD
      University of Michigan Medical School, Ann Arbor, 2014
    • PhD
      University of Michigan Medical School, Ann Arbor, 2012
    • BA
      Tufts University, Medford, 2005
    Center Memberships
    • Center Member
      Center for Computational Medicine and Bioinformatics
    • Center Member
      Rogel Cancer Center
    Research Overview

    The Prensner lab is studying the molecular biology of cancer, with a focus on pediatric brain tumors. The lab is especially interested in the non-coding genome in cancer, which is the >98% of DNA outside of the known genes, as well as RNA biology that derives from RNA translation in the non-coding genome. Their work is focused on how these molecular mechanisms may describe new cancer driver genes in childhood brain tumors and also lead to new therapies targeting the RNA biology of cancer. Specific areas of interest include:

    Pediatric Brain Tumors: We seek to discover the root causes of brain tumors in children, with specific focus on embryonal brain tumors (medulloblastoma, atypical teratoid/rhabdoid tumor) and diffuse intrinsic pontine glioma (DIPG) and diffuse midline glioma (DMG). We focus our studies on probing the cellular consequences of activating disease driver genes in these tumors. We believe that a better understanding of these diseases will lead to better treatments for patients.

    The Functional Genome in Cancer: In order to be activated, all genes convert their genetic signature of DNA into RNA. That RNA has the potential to translate, or produce, a protein — the molecule of biological function for a gene. This process requires ribosomes, a specialized complex that assembles the amino acids that generate the protein. We study the regulation of RNA translation in brain tumors and how it shapes their biology.

    RNA Biology in Cancer: We use genome-wide approaches to map the genes that cancer cells depend on. We discover and characterize non-canonical open reading frames as a layer of under explored cancer biology. These regions may change the way we think about human cancer genes, where they are located, and how they operate. We believe that search the non-canonical genome may provide the next key insight to cure a child’s cancer.

    RNA-based Therapeutics: We study how RNA may give us the next therapeutic breakthrough for childhood cancer. We discover RNA biomarkers of disease that might change clinical practice, and we explore therapeutics that target RNA and RNA translation.

    Building Community Resources for Scientists Worldwide: We work collaboratively to bring international standardization to non-canonical open reading frames. We coordinate with genome databases, proteomics resources, and academic labs, to classify RNA translation for the global public.

    For more information, please visit the Prensner lab website: https://prensnerlab.org/.

    Recent Publications See All Publications
    • Preprint
      Deep learning to decode sites of RNA translation in normal and cancerous tissues.
      Clauwaert J, McVey Z, Gupta R, Yannuzzi I, Menschaert G, Prensner JR. 2024 Mar 25; DOI:10.1101/2024.03.21.586110
      PMID: 38585907
    • Proceeding / Abstract / Poster
      Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma.
      Hofman DA, Ruiz-Orera J, Yannuzzi I, Murugesan R, Brown A, Clauser KR, Condurat AL, van Dinter JT, Engels SAG, Goodale A, van der Lugt J, Abid T, Wang L, Zhou KN, Vogelzang J, Ligon KL, Phoenix TN, Roth JA, Root DE, Hubner N, Golub TR, Bandopadhayay P, van Heesch S, Prensner JR. Mol Cell, 2024 Jan 18; 84 (2): 261 - 276.e18. DOI:10.1016/j.molcel.2023.12.003
      PMID: 38176414
    • Journal Article
      A road map for the treatment of pediatric diffuse midline glioma.
      Koschmann C, Al-Holou WN, Alonso MM, Anastas J, Bandopadhayay P, Barron T, Becher O, Cartaxo R, Castro MG, Chung C, Clausen M, Dang D, Doherty R, Duchatel R, Dun M, Filbin M, Franson A, Galban S, Garcia Moure M, Garton H, Gowda P, Marques JG, Hawkins C, Heath A, Hulleman E, Ji S, Jones C, Kilburn L, Kline C, Koldobskiy MA, Lim D, Lowenstein PR, Lu QR, Lum J, Mack S, Magge S, Marini B, Martin D, Marupudi N, Messinger D, Mody R, Morgan M, Mota M, Muraszko K, Mueller S, Natarajan SK, Nazarian J, Niculcea M, Nuechterlein N, Okada H, Opipari V, Pai MP, Pal S, Peterson E, Phoenix T, Prensner JR, Pun M, Raju GP, Reitman ZJ, Resnick A, Rogawski D, Saratsis A, Sbergio SG, Souweidane M, Stafford JM, Tzaridis T, Venkataraman S, Vittorio O, Wadden J, Wahl D, Wechsler-Reya RJ, Yadav VN, Zhang X, Zhang Q, Venneti S. Cancer Cell, 2024 Jan 8; 42 (1): 1 - 5. DOI:10.1016/j.ccell.2023.11.002
      PMID: 38039965
    • Journal Article
      Oncogenic Role of THOR, a Conserved Cancer/Testis Long Non-coding RNA.
      Hosono Y, Niknafs YS, Prensner JR, Iyer MK, Dhanasekaran SM, Mehra R, Pitchiaya S, Tien J, Escara-Wilke J, Poliakov A, Chu S-C, Saleh S, Sankar K, Su F, Guo S, Qiao Y, Freier SM, Bui H-H, Cao X, Malik R, Johnson TM, Beer DG, Feng FY, Zhou W, Chinnaiyan AM. Cell, 2023 Sep 14; 186 (19): 4254 - 4255. DOI:10.1016/j.cell.2023.08.025
      PMID: 37714137
    • Journal Article
      What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?
      Prensner JR, Abelin JG, Kok LW, Clauser KR, Mudge JM, Ruiz-Orera J, Bassani-Sternberg M, Moritz RL, Deutsch EW, van Heesch S. Mol Cell Proteomics, 2023 Sep; 22 (9): 100631 DOI:10.1016/j.mcpro.2023.100631
      PMID: 37572790
    • Journal Article
      Shining a light on the dark proteome: Non-canonical open reading frames and their encoded miniproteins as a new frontier in cancer biology.
      Posner Z, Yannuzzi I, Prensner JR. Protein Sci, 2023 Aug; 32 (8): e4708 DOI:10.1002/pro.4708
      PMID: 37350227
    • Journal Article
      MDB-32. TRANSLATION OF NON-CANONICAL OPEN READING FRAMES AS A CANCER CELL SURVIVAL MECHANISM IN CHILDHOOD MEDULLOBLASTOMA
      Hofman D, Ruiz-Orera J, Yannuzzi I, Murugesan R, van Dinter J, Clauser K, Condurat A, Herman A, Shanmugam V, Zhou K, Vogelzang J, Wang L, Roth J, Ligon K, Phoenix T, Root D, Golub T, Bandopadhayay P, van Heesch S, Prensner J. Neuro-Oncology, 2023 Jun 12; 25 (Supplement_1): i69 - i69. DOI:10.1093/neuonc/noad073.264
    • Preprint
      What can Ribo-seq and proteomics tell us about the non-canonical proteome?
      Prensner JR, Abelin JG, Kok LW, Clauser KR, Mudge JM, Ruiz-Orera J, Bassani-Sternberg M, Deutsch EW, van Heesch S. 2023 May 18; DOI:10.1101/2023.05.16.541049
      PMID: 37292611
    Featured News & Stories Logo for Damon Runyon Cancer Research Foundation
    Department News
    John Prensner, MD, PhD, receives a Clinical Investigator Award from the Damon Runyon Cancer Research Foundation
    Assistant Professor John Prensner of the Departments of Pediatrics and Biological Chemistry at U-M Medical School is the recipient of a Damon Runyon Clinical Investigator Award.