Tools & Technology Seminar Series

The DCMB Tools and Technology Seminar Series will be presented via a Zoom Live Stream each Thursday, at 12 noon EST. 

Each seminar highlights a tool or technology, that is under development or in current use, that is of interest to department and University researchers. These seminars are streamed live using Zoom and are also archived and made available for future viewing on the DCMB YouTube Chanel:

Next Seminar

Thursday, Oct 29, 2020

"CaliPro: a calibration protocol for complex mathematical models in biology" - Louis Joslyn (Computational Medicine & Bioinformatics)

Live Stream via ZOOM

 

Fall 2020 - Tools & Technology Seminar Schedule and Video Archive 

Thursday, Sep 17, 2020

Thursday, Sep 24, 2020

Thursday, Oct 08, 2020

Thursday, Oct 15, 2020

Thursday, Oct 22, 2020

  • “Translationally active cell-free expression for building synthetic cells.” - Allen Liu (Mechanical Engineering; Biomedical Engineering; Biophysics)

Thursday, Oct 29, 2020

  • "CaliPro: a calibration protocol for complex mathematical models in biology" -  Louis Joslyn (Computational Medicine & Bioinformatics)

Thursday, Nov 05, 2020

  • “Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing” - Kai Wang (Computational Medicine & Bioinformatics)

Thursday, Nov 12, 2020

  • "BAGSE: A Bayesian Hierarchical Model for Gene Set Enrichment Analysis" - Abhay Hukku (Biostatistics)

Tool Link: https://github.com/xqwen/bagse

Thursday, Nov 19, 2020

  • “Quantitative Data Extraction and Computational Modeling of Cell Signaling from Single-Cell, Time-Lapse Imaging” - Luker Lab (Radiology; Biomedical Engineering) and Linderman Lab (Chemical Engineering; Biomedical Engineering)

Thursday, Dec 03, 2020

  • “SCGid: a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries of uncultured eukaryotes.” - Kevin Amses (Ecology and Evolutionary Biology)

Thursday, Dec 10, 2020

  • TBD - Karnovsky Lab (Computational Medicine & Bioinformatics)

 

 

Tools & Technology Seminar Archive

 

Winter 2020 

Thursday, Jan 16, 2020

Thursday, Jan 23, 2020

Thursday, Jan 30, 2020

Thursday, Feb 06, 2020

Thursday, Feb 13, 2020

Thursday, Feb 20, 2020

Thursday, Feb 27, 2020

Thursday, Mar 05, 2020

  • “Integrative Statistical Modeling Approaches for Imaging-Genetics Data” - Shariq Mohammed

Thursday, Mar 12, 2020

Thursday, Mar 19, 2020

  • CANCELLED 

Thursday, Mar 26, 2020

Thursday, Apr 02, 2020

Thursday, Apr 09, 2020

Thursday, Apr 16, 2020

2019 

Thursday, Jan 17, 2019

Thursday, Jan 24, 2019

Thursday, Jan 31, 2019

  • “Exploring bias in ATAC-seq experiments with ataqv, an interactive quality control tool for ATAC-seq data” - Peter Orchard (Computational Medicine & Bioinformatics)

Thursday, Feb 07, 2019

Thursday, Feb 14, 2019

Thursday, Feb 21, 2019

Thursday, Feb 28, 2019

Thursday, Mar 07, 2019

Thursday, Mar 14, 2019

  • CANCELLED

Thursday, Mar 21, 2019

Thursday, Mar 28, 2019

Thursday, Apr 04, 2019

Thursday, Apr 11, 2019

Thursday, Apr 18, 2019

Thursday, Sep 19, 2019

  • "ML-MATCH: A ML based atom parameterization program" - Murchtricia Charles (Computational Medicine & Bioinformatics)

Thursday, Sep 26, 2019

Thursday, Oct 03, 2019

Thursday, Oct 10, 2019

Thursday, Oct 17, 2019

Thursday, Oct 24, 2019

Thursday, October 31, 2019

Thursday, November 07, 2019

Thursday, November 21, 2019

Thursday, December 05, 2019

Thursday, December 12, 2019

2018 

Thursday, Jan 11, 2018 

Thursday, Jan 18, 2018 

  • "TnseqDiff: identification of conditionally essential genes in transposon sequencing studies” by  Lili Zhao (Biostatistics)

Thursday, Jan 25, 2018

Thursday, Feb 01, 2018

Thursday, Feb 08, 2018

Thursday, Feb 15, 2018

Thursday, Feb 22, 2018

Thursday, Mar 01, 2018

Thursday, Mar 08, 2018

Thursday, Mar 15, 2018

Thursday, Mar 22, 2018

Thursday, Mar 29, 2018

Thursday, Apr 05, 2018

  • "A versatile toolbox for droplet-based single-cell mRNA sequencing" by  Katsuo Kurabayashi (Mechanical Engineering, Electrical Engineering and Computer Science)

Thursday, Apr 12, 2018

Thursday, Apr 19, 2018

Thursday, Sep 20, 2018

Thursday, Sep 27, 2018

Thursday, Oct 4, 2018

Thursday, Oct 11, 2018

Thursday, Oct 18, 2018

Thursday, Oct 25, 2018

Thursday, Nov 1, 2018

Thursday, Nov 8, 2018

Thursday, Dec 13, 2018

  • “Deep Learning Tools for Pattern Discovery in Electronic Health Records” - Sardar Ansari 

2017 

Thursday, Jan 19, 2017

Thursday, Jan 26, 2017

Thursday, Feb 02, 2017

Thursday, Feb 09, 2017

Thursday, Feb 16, 2017

Thursday, Feb 23, 2017

Thursday, Mar 02, 2017

Thursday, Mar 09, 2017

Thursday, Mar 16, 2017

Thursday, Mar 23, 2017

Thursday, Mar 30, 2017

Thursday, Apr 06, 2017

Thursday, Apr 13, 2017

Thursday, Apr 20, 2017

Thursday, Apr 27, 2017

Thursday, Sep 21, 2017

Thursday, Sep 28, 2017

Thursday, Oct 05, 2017

Thursday, Oct 12, 2017

Thursday, Oct 19, 2017

Thursday, Oct 26, 2017

Thursday, Nov 02, 2017

Thursday, Nov 09, 2017

Thursday, Nov 16, 2017

Thursday, Nov 30, 2017

Thursday, Dec 07, 2017

Thursday, Dec 14, 2017

2016 

Dec 15, 2016

  • “Combining comparative genomics and graph databases to improve and streamline population and ecosystem meta-omics analyses.” - Kevin Meyer

Dec 01, 2016

  • Title TBA - Mitch Fernandez

Nov 17, 2016

Nov 03, 2016

Oct 20, 2016

Oct 13, 2016

Oct 06, 2016

Sep 29, 2016

Sep 22, 2016

Sep 15, 2016

  •  “annotatr: Associating genomic regions with genomic annotations” - Raymond Cavalcante

Apr 28, 2016

Apr 21, 2016

Mar 31, 2016

Mar 17, 2016

Mar 03, 2016

Feb 18, 2016

Feb 11, 2016

Feb 4, 2016

Jan 21, 2016

Jan 14, 2016

2015 

Dec 17, 2015

Dec 10, 2015

Dec 3, 2015

Nov 19, 2015

Nov 5, 2015

Oct 29, 2015

  • "Developing integrated online tools for protein structural dynamics and evolutionary analysis" - Shashank Jariwala

Oct 22, 2015

Oct 15, 2015

Oct 8, 2015

Oct 01, 2015

Sep 24, 2015

Sep 10, 2015
"Chromosome conformation capture to interrogate the 3D genome" - Haiming Chen

May 22, 2015

May 14, 2015

May 07, 2015

Apr 30, 2015

Mar 26, 2015

Mar 19, 2015

Mar 12, 2015

  • "Big Data and Data Science: Hype or Reality" - Brian Athey

Mar 5, 2015

  • "Massively parallel assays for functional interpretation of mutations" - Jacob Kitzman

Feb 26, 2015

Feb 19, 2015

Feb 12, 2015

Feb 05, 2015

Jan 29, 2015

Jan 22, 2015

Jan 15, 2015

2014 

Dec 11, 2014

Nov 20, 2014

Nov 13, 2014

Oct 30, 2014

Oct 02, 2014

Sep 25, 2015

  • "RAREMETAL: fast and powerful meta-analysis for rare variants"-  - Shuang Feng

Sep 18, 2014

May 29, 2014

May 22, 2014

May 08, 2014

May 01, 2014

Apr 03, 2014

Mar 27, 2014

  • "Computational Prediction of Sudden Cardiac Death following Acute Coronary Syndrome"-  - Alexander Van Esbroeck

Mar 20, 2014

Mar 13, 2014

Mar 06, 2014

Feb 27, 2014

Feb 20, 2014

  • "Targeted next generation sequencing of cancer using Ion Torrent technology"-  - Scott Tomlins

Feb 13, 2014

Feb 06, 2014

  • "Epicode: combinatorial epigenetic patterns as quantitative predictors of chromatin biology"-  - Marcin Cieslik

Jan 30, 2014